Difference between revisions of "Soybean"

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This is the supplementary data for Marsh et al.
 
This is the supplementary data for Marsh et al.
  
[Gm20.INDELs.vcf.gz all indels on Gm20 Wm82 v4 assembly]
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[http://appliedbioinformatics.com.au/download/Gm20.INDELs.vcf.gz all indels on Gm20 Wm82 v4 assembly]
  
[Gm20.SNPs.vcf.gz all SNPs on Gm20 Wm82 v4 assembly]
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[http://appliedbioinformatics.com.au/download/Gm20.SNPs.vcf.gz all SNPs on Gm20 Wm82 v4 assembly]
  
[filtered_biallelic_Gm20.INs.vcf.gz filtered insertions on Gm20 biallelic only]
+
[http://appliedbioinformatics.com.au/download/filtered_biallelic_Gm20.INs.vcf.gz filtered insertions on Gm20 biallelic only]
  
[filtered_biallelic_Gm20.DELs.vcf.gz filtered deletions on Gm20 biallelic only]
+
[http://appliedbioinformatics.com.au/download/filtered_biallelic_Gm20.DELs.vcf.gz filtered deletions on Gm20 biallelic only]
  
 
=== Soybean pangenome ===
 
=== Soybean pangenome ===

Revision as of 07:28, 8 October 2021

Soybean genomics

Soybean cqProt003 supplementary data

This is the supplementary data for Marsh et al.

all indels on Gm20 Wm82 v4 assembly

all SNPs on Gm20 Wm82 v4 assembly

filtered insertions on Gm20 biallelic only

filtered deletions on Gm20 biallelic only

Soybean pangenome

Supplementary information relating to Bayer et al. 2021, Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding, is available below.

JBrowse genome viewer

Supplementary Tables: Download here

The data can also be viewed on soybase and UWA Research Repository.