Difference between revisions of "Seagrass Zmu Genome"
From Applied Bioinformatics Group
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The draft assembly can be downloaded from: | The draft assembly can be downloaded from: | ||
| − | :[http://appliedbioinformatics.com.au/download/ | + | :[http://appliedbioinformatics.com.au/download/Zmu_v1_scaffolds.fa.tar.gz Scaffolds] |
The predicted genes in proteins, transcripts and CDS can be downloaded from: | The predicted genes in proteins, transcripts and CDS can be downloaded from: | ||
| − | :[http://appliedbioinformatics.com.au/download/ | + | :[http://appliedbioinformatics.com.au/download/Zmu_v1_protein.fa.tar.gz Proteins] |
| − | :[http://appliedbioinformatics.com.au/download/ | + | :[http://appliedbioinformatics.com.au/download/Zmu_v1_transcript.fa.tar.gz Transcripts] |
| − | :[http://appliedbioinformatics.com.au/download/ | + | :[http://appliedbioinformatics.com.au/download/Zmu_v1_cds.fa.tar.gz CDS] |
The gene models reported by MAKER in the format of gff can be downloaded from: | The gene models reported by MAKER in the format of gff can be downloaded from: | ||
| − | :[http://appliedbioinformatics.com.au/download/ | + | :[http://appliedbioinformatics.com.au/download/Zmu_v1_maker.gff.tar.gz Gene_models] |
The domains annotation of predicted proteins in the format of gff can be downloaded from: | The domains annotation of predicted proteins in the format of gff can be downloaded from: | ||
| − | :[http://appliedbioinformatics.com.au/download/ | + | :[http://appliedbioinformatics.com.au/download/Zmu_v1_interproscan_of_proteins.gff.tar.gz Domains_annotation] |
The tab-deliminated text file for orthologous groups between five species can be downloaded from | The tab-deliminated text file for orthologous groups between five species can be downloaded from | ||
:[http://appliedbioinformatics.com.au/download/Zmu_orthogroups.txt.tar.gz Orthogroups] | :[http://appliedbioinformatics.com.au/download/Zmu_orthogroups.txt.tar.gz Orthogroups] | ||
Revision as of 08:18, 21 April 2016
This page provides access to Zostera muelleri genome assembly and annotation data for the paper Lee et al. 2016.
The draft assembly can be downloaded from:
The predicted genes in proteins, transcripts and CDS can be downloaded from:
The gene models reported by MAKER in the format of gff can be downloaded from:
The domains annotation of predicted proteins in the format of gff can be downloaded from:
The tab-deliminated text file for orthologous groups between five species can be downloaded from
