Difference between revisions of "Soybean"
From Applied Bioinformatics Group
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− | + | # Soybean genomics | |
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+ | ## Soybean cqProt003 supplementary data | ||
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+ | This is the supplementary data for Marsh et al. | ||
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+ | [Gm20.INDELs.vcf.gz all indels on Gm20, Wm82 v4 assembly] | ||
+ | |||
+ | [Gm20.SNPs.vcf.gz all SNPs on Gm20, Wm82 v4 assembly] | ||
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+ | [filtered_biallelic_Gm20.INs.vcf.gz filtered insertions on Gm20 - biallelic only] | ||
+ | |||
+ | [filtered_biallelic_Gm20.DELs.vcf.gz filtered deletions on Gm20 - biallelic only] | ||
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+ | ## Soybean pangenome | ||
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+ | Supplementary information relating to Bayer et al. 2021, [https://acsess.onlinelibrary.wiley.com/doi/10.1002/tpg2.20109 Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding], is available below. | ||
[http://www.appliedbioinformatics.com.au/soybean JBrowse genome viewer] | [http://www.appliedbioinformatics.com.au/soybean JBrowse genome viewer] | ||
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Supplementary Tables: [http://www.appliedbioinformatics.com.au/download/Soybean_pangenome_Supp_Tables.xlsx Download here] | Supplementary Tables: [http://www.appliedbioinformatics.com.au/download/Soybean_pangenome_Supp_Tables.xlsx Download here] | ||
− | The data can also be viewed on [https://soybase.org/projects/SoyBase.C2020.02.php soybase] | + | The data can also be viewed on [https://soybase.org/projects/SoyBase.C2020.02.php soybase] and [https://research-repository.uwa.edu.au/en/datasets/soybean-pangenome-snps-assembly-annotation-pav UWA Research Repository]. |
Revision as of 07:26, 8 October 2021
- Soybean genomics
- Soybean cqProt003 supplementary data
This is the supplementary data for Marsh et al.
[Gm20.INDELs.vcf.gz all indels on Gm20, Wm82 v4 assembly]
[Gm20.SNPs.vcf.gz all SNPs on Gm20, Wm82 v4 assembly]
[filtered_biallelic_Gm20.INs.vcf.gz filtered insertions on Gm20 - biallelic only]
[filtered_biallelic_Gm20.DELs.vcf.gz filtered deletions on Gm20 - biallelic only]
- Soybean pangenome
Supplementary information relating to Bayer et al. 2021, Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding, is available below.
Supplementary Tables: Download here
The data can also be viewed on soybase and UWA Research Repository.