Seagrasses
This page collects assemblies, annotations, and supplementary data for the Amphibolis antarctica and Posidonia australis genome assemblies.
The raw reads and assemblies are deposited in the SRA under BioProject PRJNA835502
Posidonia australis
Draft genome assembly:
P_australis_genome_bigger1kbp.fasta.gz
MAKER annotation:
GFF of all evidence: P_australis_genome_bigger1kbp.all.gff.gz
GFF of gene models only: P_australis_genome_bigger1kbp.all.gene_models.gff.gz
Proteins (fasta): P_australis_genome_bigger1kbp.all.maker.proteins.fasta.gz
Transcripts/CDS (fasta): P_australis_genome_bigger1kbp.all.maker.transcripts.fasta.gz
Amphibolis antarctica
Draft genome assembly:
A_antarctica_genome_bigger1kbp.fasta.gz
MAKER annotation:
GFF of all evidence: A_antarctica_genome_bigger1kbp.all.gff.gz GFF of gene models only: A_antarctica_genome_bigger1kbp.all.gene_models.gff.gz
Proteins (fasta): A_antarctica_genome_bigger1kbp.all.maker.proteins.fasta.gz Transcripts/CDS (fasta): A_antarctica_genome_bigger1kbp.all.maker.transcripts.fasta.gz
EDTA results
These are EDTA TE libraries, annotated using TEfinder using rexdb-plant. I renamed the TE names, if TEfinder had no hit, I used the EDTA name.
For example, this is the TEfinder output:
>TE_00000000#Unknown TE_00000000#DNA/DTC
Saying that TEfinder does not know the class, but EDTA has it under DNA/DTC based on the tool that predicted it.
This is the final name:
>TE_00000000#DNA/DTC TE_00000000#DNA/DTC
Zostera muelleri: Zmu_v1_scaffolds.big1k.merged_scaffolds.renamed.fa.mod.EDTA.TElib.fa.rexdb.cls.renamed.lib.fa.gz
Zostera marina: Zostera_marina.mainGenome.fasta.mod.EDTA.TElib.fa.rexdb-plant.cls.renamed.lib.fa.gz