BOLPANGENOME

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This page provides access to Brassica oleracea pangenome data.

Pangenome contigs can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.contigs.13062016.fasta.gz

Pangenome annotation can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.genes.13062016.gff3.gz

Placement of pangenome contigs along the TO1000 chromosomes can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.contigs.placement.13062016.csv.gz

SNPs can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.snps.13062016.tab.gz

List of TE related genes can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.TE.realated.genes.13062016.gz

Contigs are available for BLAST under:

http://appliedbioinformatics.com.au/gbrowseblast/cgi-bin/index.pl

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