BOLPANGENOME

From Applied Bioinformatics Group
Revision as of 01:04, 8 August 2016 by Agnieszka (talk | contribs)
Jump to: navigation, search

This page provides access to Brassica oleracea pangenome data.

Pangenome contigs can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.contigs.13062016.fasta.gz

Pangenome annotation can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.genes.13062016.gff3.gz

Placement of pangenome contigs along the TO1000 chromosomes can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.contigs.placement.13062016.csv.gz

SNPs can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.snps.13062016.tab.gz

List of TE related genes can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.TE.realated.genes.13062016.gz

The GBrowse is available from: http://appliedbioinformatics.com.au/cgi-bin/gb2/gbrowse/BolePan

The The BlastGBrowse is available from: http://appliedbioinformatics.com.au/gbrowseblast

Retrieved from "https://appliedbioinformatics.com.au/Edwards/index.php?title=BOLPANGENOME&oldid=883"