DaisyChain

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We have developed an assembly homology graph software named DaisyChain to produce interactive graph visualizations from custom-built homology databases. The gene-centric representation includes local gene neighborhood in order to distinguish orthologs and paralogs by local synteny. The software supports genome sequences in FASTA format and GFF3 formatted annotation files and the process of building the homology database requires a minimum amount of user interaction. DaisyChain comes with an integrated web viewer which can be used for both data analysis and data publishing.

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DaisyChain