https://appliedbioinformatics.com.au/Edwards/api.php?action=feedcontributions&feedformat=atom&user=Yyx8671 2026-04-13T17:06:42Z User contributions MediaWiki 1.28.0 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=1110 2019-09-27T09:14:37Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2019) Using genomics to adapt crops to climate change. In: Sarkar A., Sensarma S., vanLoon G. (eds) Sustainable Solutions for Food Security. ''Springer'', Cham, doi:10.1007/978-3-319-77878-5_5<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2017) Databases for wheat genomics and crop improvement. Wheat Biotechnology: Methods and Protocols, ''Methods in Molecular Biology'', vol. 1679, doi: 10.1007/978-1-4939-7337-8_18, ''Springer'' <br /> <br /> *Papers<br /> #Valliyodan B, Cannon S, Bayer B, Shu S, Ren L, Jenkins J, Chung C, Chan T, Daum C, Plott C, Hastie A, Baruch K, Barry W, Huang W, Patil G, Varshney R, Hu H, Batley J, '''Yuan Y''', Song Q, Goodstein D, Stacey G, Lam H, Jackson S, Schmutz J, Grimwood J, Edwards D, Nguyen H (2019) Construction and comparison of three new reference-quality genome assemblies for soybean, ''the Plant Journal'', doi: 10.1111/tpj.14500<br /> #'''Yuan Y''', Bayer P, Vrana, J, Dolezel J, Edwards D, Erskine W, Kaur P. (2018) Large-scale structural variation detection in subterranean clover subtypes using optical mapping, ''Frontiers in Plant Science'', 9, 971, doi: 10.3389/fpls.2018.00971<br /> #'''Yuan Y''', Lee H, Hu H, Scheben A, Edwards D. (2018) Single-cell genomic analysis in plants. ''Genes''. doi: 10.3390/genes9010050<br /> #'''Yuan Y''', Bayer P, Scheben A, Chan CKK, Edwards D. (2017) BioNanoAnalyst: A visualisation tool to assess genome assembly quality using BioNano data. ''BMC Bioinformatics''. doi: 10.1186/s12859-017-1735-4<br /> #'''Yuan Y''', Bayer P, Lee H, Edwards D. (2017) runBNG: A software package for BioNano genomic analysis on the command line. ''Bioinformatics''. doi: 10.1093/bioinformatics/btx366<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. doi:10.1111/pbi.12742<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Preprints<br /> #'''Yuan Y''', Bayer P, Vrana, J, Dolezel J, Edwards D, Erskine W, Kaur P. (2017) Large-scale structural variation detection in subterranean clover subtypes using optical mapping validated at nucleotide level, ''bioRxiv'', 232132, doi: 10.1101/232132<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> #'''Yuan Y''', Anderson R, Bayer P, Lee H, Chan C, Edwards D (2019) A fast and efficient long-read genome assembly approach for large and complex genomes. ''The International Plant &amp; Animal Genome XXVII'', San Diego, USA, PO0061<br /> <br /> *Conference presentations: <br /> #'''Yuan Y''', Bayer P, Lee H, Scheben A, Chan C, Edwards D (2019) Bionano data analysis on the command line and genome assembly quality assessment using a GUI. ''The International Plant &amp; Animal Genome XXVII'', San Diego, USA, C01<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Biological Sciences <br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=1105 2019-01-25T09:06:44Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2019) Using genomics to adapt crops to climate change. In: Sarkar A., Sensarma S., vanLoon G. (eds) Sustainable Solutions for Food Security. ''Springer'', Cham, doi:10.1007/978-3-319-77878-5_5<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2017) Databases for wheat genomics and crop improvement. Wheat Biotechnology: Methods and Protocols, ''Methods in Molecular Biology'', vol. 1679, doi: 10.1007/978-1-4939-7337-8_18, ''Springer'' <br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Vrana, J, Dolezel J, Edwards D, Erskine W, Kaur P. (2018) Large-scale structural variation detection in subterranean clover subtypes using optical mapping, ''Frontiers in Plant Science'', 9, 971, doi: 10.3389/fpls.2018.00971<br /> #'''Yuan Y''', Lee H, Hu H, Scheben A, Edwards D. (2018) Single-cell genomic analysis in plants. ''Genes''. doi: 10.3390/genes9010050<br /> #'''Yuan Y''', Bayer P, Scheben A, Chan CKK, Edwards D. (2017) BioNanoAnalyst: A visualisation tool to assess genome assembly quality using BioNano data. ''BMC Bioinformatics''. doi: 10.1186/s12859-017-1735-4<br /> #'''Yuan Y''', Bayer P, Lee H, Edwards D. (2017) runBNG: A software package for BioNano genomic analysis on the command line. ''Bioinformatics''. doi: 10.1093/bioinformatics/btx366<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. doi:10.1111/pbi.12742<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Preprints<br /> #'''Yuan Y''', Bayer P, Vrana, J, Dolezel J, Edwards D, Erskine W, Kaur P. (2017) Large-scale structural variation detection in subterranean clover subtypes using optical mapping validated at nucleotide level, ''bioRxiv'', 232132, doi: 10.1101/232132<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> #'''Yuan Y''', Anderson R, Bayer P, Lee H, Chan C, Edwards D (2019) A fast and efficient long-read genome assembly approach for large and complex genomes. ''The International Plant &amp; Animal Genome XXVII'', San Diego, USA, PO0061<br /> <br /> *Conference presentations: <br /> #'''Yuan Y''', Bayer P, Lee H, Scheben A, Chan C, Edwards D (2019) Bionano data analysis on the command line and genome assembly quality assessment using a GUI. ''The International Plant &amp; Animal Genome XXVII'', San Diego, USA, C01<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Biological Sciences <br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=1104 2019-01-25T09:02:35Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2019) Using genomics to adapt crops to climate change. In: Sarkar A., Sensarma S., vanLoon G. (eds) Sustainable Solutions for Food Security. ''Springer'', Cham, doi:10.1007/978-3-319-77878-5_5<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2017) Databases for wheat genomics and crop improvement. Wheat Biotechnology: Methods and Protocols, ''Methods in Molecular Biology'', vol. 1679, doi: 10.1007/978-1-4939-7337-8_18, ''Springer'' <br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Vrana, J, Dolezel J, Edwards D, Erskine W, Kaur P. (2018) Large-scale structural variation detection in subterranean clover subtypes using optical mapping, ''Frontiers in Plant Science'', 9, 971, doi: 10.3389/fpls.2018.00971<br /> #'''Yuan Y''', Lee H, Hu H, Scheben A, Edwards D. (2018) Single-cell genomic analysis in plants. ''Genes''. doi: 10.3390/genes9010050<br /> #'''Yuan Y''', Bayer P, Scheben A, Chan CKK, Edwards D. (2017) BioNanoAnalyst: A visualisation tool to assess genome assembly quality using BioNano data. ''BMC Bioinformatics''. doi: 10.1186/s12859-017-1735-4<br /> #'''Yuan Y''', Bayer P, Lee H, Edwards D. (2017) runBNG: A software package for BioNano genomic analysis on the command line. ''Bioinformatics''. doi: 10.1093/bioinformatics/btx366<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. doi:10.1111/pbi.12742<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Preprints<br /> #'''Yuan Y''', Bayer P, Vrana, J, Dolezel J, Edwards D, Erskine W, Kaur P. (2017) Large-scale structural variation detection in subterranean clover subtypes using optical mapping validated at nucleotide level, ''bioRxiv'', 232132, doi: 10.1101/232132<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Biological Sciences <br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=1099 2018-06-24T05:00:34Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. ''Springer'', (in press) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2017) Databases for wheat genomics and crop improvement. Wheat Biotechnology: Methods and Protocols, ''Methods in Molecular Biology'', vol. 1679, doi: 10.1007/978-1-4939-7337-8_18, ''Springer'' <br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Vrana, J, Dolezel J, Edwards D, Erskine W, Kaur P. (2018) Large-scale structural variation detection in subterranean clover subtypes using optical mapping, ''Frontiers in Plant Science'', 9, 971, doi: 10.3389/fpls.2018.00971<br /> #'''Yuan Y''', Lee H, Hu H, Scheben A, Edwards D. (2018) Single-cell genomic analysis in plants. ''Genes''. doi: 10.3390/genes9010050<br /> #'''Yuan Y''', Bayer P, Scheben A, Chan CKK, Edwards D. (2017) BioNanoAnalyst: A visualisation tool to assess genome assembly quality using BioNano data. ''BMC Bioinformatics''. doi: 10.1186/s12859-017-1735-4<br /> #'''Yuan Y''', Bayer P, Lee H, Edwards D. (2017) runBNG: A software package for BioNano genomic analysis on the command line. ''Bioinformatics''. doi: 10.1093/bioinformatics/btx366<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. doi:10.1111/pbi.12742<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Preprints<br /> #'''Yuan Y''', Bayer P, Vrana, J, Dolezel J, Edwards D, Erskine W, Kaur P. (2017) Large-scale structural variation detection in subterranean clover subtypes using optical mapping validated at nucleotide level, ''bioRxiv'', 232132, doi: 10.1101/232132<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Biological Sciences <br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=1098 2018-06-24T04:57:20Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. ''Springer'', (in press) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2017) Databases for wheat genomics and crop improvement. Wheat Biotechnology: Methods and Protocols, ''Methods in Molecular Biology'', vol. 1679, doi: 10.1007/978-1-4939-7337-8_18, ''Springer'' <br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Vrana, J, Dolezel J, Edwards D, Erskine W, Kaur P. (2017) Large-scale structural variation detection in subterranean clover subtypes using optical mapping, ''Frontiers in Plant Science'', 9, 971, doi: 10.3389/fpls.2018.00971<br /> #'''Yuan Y''', Lee H, Hu H, Scheben A, Edwards D. (2018) Single-cell genomic analysis in plants. ''Genes''. doi: 10.3390/genes9010050<br /> #'''Yuan Y''', Bayer P, Scheben A, Chan CKK, Edwards D. (2017) BioNanoAnalyst: A visualisation tool to assess genome assembly quality using BioNano data. ''BMC Bioinformatics''. doi: 10.1186/s12859-017-1735-4<br /> #'''Yuan Y''', Bayer P, Lee H, Edwards D. (2017) runBNG: A software package for BioNano genomic analysis on the command line. ''Bioinformatics''. doi: 10.1093/bioinformatics/btx366<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. doi:10.1111/pbi.12742<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Preprints<br /> #'''Yuan Y''', Bayer P, Vrana, J, Dolezel J, Edwards D, Erskine W, Kaur P. (2017) Large-scale structural variation detection in subterranean clover subtypes using optical mapping validated at nucleotide level, ''bioRxiv'', 232132, doi: 10.1101/232132<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Biological Sciences <br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=1093 2018-04-22T10:39:31Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. ''Springer'', (in press) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2017) Databases for wheat genomics and crop improvement. Wheat Biotechnology: Methods and Protocols, ''Methods in Molecular Biology'', vol. 1679, doi: 10.1007/978-1-4939-7337-8_18, ''Springer'' <br /> <br /> *Papers<br /> #'''Yuan Y''', Lee H, Hu H, Scheben A, Edwards D. (2018) Single-cell genomic analysis in plants. ''Genes''. doi: 10.3390/genes9010050<br /> #'''Yuan Y''', Bayer P, Scheben A, Chan CKK, Edwards D. (2017) BioNanoAnalyst: A visualisation tool to assess genome assembly quality using BioNano data. ''BMC Bioinformatics''. doi: 10.1186/s12859-017-1735-4<br /> #'''Yuan Y''', Bayer P, Lee H, Edwards D. (2017) runBNG: A software package for BioNano genomic analysis on the command line. ''Bioinformatics''. doi: 10.1093/bioinformatics/btx366<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. doi:10.1111/pbi.12742<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Preprints<br /> #'''Yuan Y''', Bayer P, Vrana, J, Dolezel J, Edwards D, Erskine W, Kaur P. (2017) Large-scale structural variation detection in subterranean clover subtypes using optical mapping validated at nucleotide level, ''bioRxiv'', 232132, doi: 10.1101/232132<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Biological Sciences <br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=1092 2018-04-22T10:39:04Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. ''Springer'', (submitted) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2017) Databases for wheat genomics and crop improvement. Wheat Biotechnology: Methods and Protocols, ''Methods in Molecular Biology'', vol. 1679, doi: 10.1007/978-1-4939-7337-8_18, ''Springer'' (in press)<br /> <br /> *Papers<br /> #'''Yuan Y''', Lee H, Hu H, Scheben A, Edwards D. (2018) Single-cell genomic analysis in plants. ''Genes''. doi: 10.3390/genes9010050<br /> #'''Yuan Y''', Bayer P, Scheben A, Chan CKK, Edwards D. (2017) BioNanoAnalyst: A visualisation tool to assess genome assembly quality using BioNano data. ''BMC Bioinformatics''. doi: 10.1186/s12859-017-1735-4<br /> #'''Yuan Y''', Bayer P, Lee H, Edwards D. (2017) runBNG: A software package for BioNano genomic analysis on the command line. ''Bioinformatics''. doi: 10.1093/bioinformatics/btx366<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. doi:10.1111/pbi.12742<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Preprints<br /> #'''Yuan Y''', Bayer P, Vrana, J, Dolezel J, Edwards D, Erskine W, Kaur P. (2017) Large-scale structural variation detection in subterranean clover subtypes using optical mapping validated at nucleotide level, ''bioRxiv'', 232132, doi: 10.1101/232132<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Biological Sciences <br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=1048 2018-01-25T06:32:39Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. ''Springer'', (submitted) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2017) Databases for wheat genomics and crop improvement. Wheat Biotechnology: Methods and Protocols, ''Methods in Molecular Biology'', vol. 1679, doi: 10.1007/978-1-4939-7337-8_18, ''Springer'' (in press)<br /> <br /> *Papers<br /> #'''Yuan Y''', Lee H, Hu H, Scheben A, Edwards D. (2018) Single-cell genomic analysis in plants. ''Genes''. doi: 10.3390/genes9010050<br /> #'''Yuan Y''', Bayer P, Scheben A, Chan CKK, Edwards D. (2017) BioNanoAnalyst: A visualisation tool to assess genome assembly quality using BioNano data. ''BMC Bioinformatics''. doi: 10.1186/s12859-017-1735-4<br /> #'''Yuan Y''', Bayer P, Lee H, Edwards D. (2017) runBNG: A software package for BioNano genomic analysis on the command line. ''Bioinformatics''. doi: 10.1093/bioinformatics/btx366<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. doi:10.1111/pbi.12742<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Biological Sciences <br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=1017 2017-07-16T13:24:07Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. ''Springer'', (submitted) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2017) Databases for wheat genomics and crop improvement. Wheat Biotechnology: Methods and Protocols, ''Methods in Molecular Biology'', vol. 1679, doi: 10.1007/978-1-4939-7337-8_18, ''Springer'' (in press)<br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Scheben A, Chan CKK, Edwards D. (2017) BioNanoAnalyst: A visualisation tool to assess genome assembly quality using BioNano data. ''BMC Bioinformatics''. doi: 10.1186/s12859-017-1735-4<br /> #'''Yuan Y''', Bayer P, Lee H, Edwards D. (2017) runBNG: A software package for BioNano genomic analysis on the command line. ''Bioinformatics''. doi: 10.1093/bioinformatics/btx366<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. doi:10.1111/pbi.12742<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Biological Sciences <br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=1016 2017-07-16T12:14:33Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. ''Springer'', (submitted) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2017) Databases for wheat genomics and crop improvement. ''Wheat Biotechnology: Methods and Protocols'', Methods in Molecular Biology, vol. 1679, doi: 10.1007/978-1-4939-7337-8_18, ''Springer'' (in press)<br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Scheben A, Chan CKK, Edwards D. (2017) BioNanoAnalyst: A visualisation tool to assess genome assembly quality using BioNano data. ''BMC Bioinformatics''. doi: 10.1186/s12859-017-1735-4<br /> #'''Yuan Y''', Bayer P, Lee H, Edwards D. (2017) runBNG: A software package for BioNano genomic analysis on the command line. ''Bioinformatics''. doi: 10.1093/bioinformatics/btx366<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. doi:10.1111/pbi.12742<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Biological Sciences <br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=1015 2017-07-01T03:12:47Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. ''Springer'', (submitted) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. ''Methods in Molecular Biology'', ''Springer (USA)'', (in press)<br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Scheben A, Chan CKK, Edwards D. (2017) BioNanoAnalyst: A visualisation tool to assess genome assembly quality using BioNano data. ''BMC Bioinformatics''. doi: 10.1186/s12859-017-1735-4<br /> #'''Yuan Y''', Bayer P, Lee H, Edwards D. (2017) runBNG: A software package for BioNano genomic analysis on the command line. ''Bioinformatics''. doi: 10.1093/bioinformatics/btx366<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. doi:10.1111/pbi.12742<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Biological Sciences <br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=1014 2017-07-01T03:12:27Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. ''Springer'', (submitted) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. ''Methods in Molecular Biology'', ''Springer (USA)'', (in press)<br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Scheben A, Chan CKK, Edwards D. (2017) BioNanoAnalyst: A visualisation tool to assess genome assembly quality using BioNano data. ''BMC Bioinformatics''.doi: 10.1186/s12859-017-1735-4<br /> #'''Yuan Y''', Bayer P, Lee H, Edwards D. (2017) runBNG: A software package for BioNano genomic analysis on the command line. ''Bioinformatics''. doi: 10.1093/bioinformatics/btx366<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. doi:10.1111/pbi.12742<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Biological Sciences <br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=1013 2017-06-18T12:55:33Z

<p>Yyx8671: /* Contact */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. ''Springer'', (submitted) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. ''Methods in Molecular Biology'', ''Springer (USA)'', (in press)<br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Scheben A, Chan CKK, Edwards D. (2017) BioNanoAnalyst: A visualisation tool to assess genome assembly quality using BioNano data. ''BMC Bioinformatics'' (accepted on 16 June 2017).<br /> #'''Yuan Y''', Bayer P, Lee H, Edwards D. (2017) runBNG: A software package for BioNano genomic analysis on the command line. ''Bioinformatics''. doi: 10.1093/bioinformatics/btx366<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. doi:10.1111/pbi.12742<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Biological Sciences <br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=1012 2017-06-18T12:53:36Z

<p>Yyx8671: /* Contact */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. ''Springer'', (submitted) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. ''Methods in Molecular Biology'', ''Springer (USA)'', (in press)<br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Scheben A, Chan CKK, Edwards D. (2017) BioNanoAnalyst: A visualisation tool to assess genome assembly quality using BioNano data. ''BMC Bioinformatics'' (accepted on 16 June 2017).<br /> #'''Yuan Y''', Bayer P, Lee H, Edwards D. (2017) runBNG: A software package for BioNano genomic analysis on the command line. ''Bioinformatics''. doi: 10.1093/bioinformatics/btx366<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. doi:10.1111/pbi.12742<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Biological Sciences <br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@research.uwa.edu.au<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=1011 2017-06-18T12:52:16Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. ''Springer'', (submitted) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. ''Methods in Molecular Biology'', ''Springer (USA)'', (in press)<br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Scheben A, Chan CKK, Edwards D. (2017) BioNanoAnalyst: A visualisation tool to assess genome assembly quality using BioNano data. ''BMC Bioinformatics'' (accepted on 16 June 2017).<br /> #'''Yuan Y''', Bayer P, Lee H, Edwards D. (2017) runBNG: A software package for BioNano genomic analysis on the command line. ''Bioinformatics''. doi: 10.1093/bioinformatics/btx366<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. doi:10.1111/pbi.12742<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=1010 2017-06-16T14:10:45Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. ''Springer'', (submitted) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. ''Methods in Molecular Biology'', ''Springer (USA)'', (in press)<br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Scheben A, Chan CKK, Edwards D. (2017) BioNanoAnalyst: A visualisation tool to assess genome assembly quality using BioNano data. ''BMC Bioinformatics'' (accepted in June).<br /> #'''Yuan Y''', Bayer P, Lee H, Edwards D. (2017) runBNG: A software package for BioNano genomic analysis on the command line. ''Bioinformatics''. doi: 10.1093/bioinformatics/btx366<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. doi:10.1111/pbi.12742<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=1009 2017-06-11T12:57:21Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. ''Springer'', (submitted) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. ''Methods in Molecular Biology'', ''Springer (USA)'', (in press)<br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Lee H, Edwards D. (2017) runBNG: A software package for BioNano genomic analysis on the command line. ''Bioinformatics''. doi: 10.1093/bioinformatics/btx366<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. doi:10.1111/pbi.12742<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=1008 2017-06-11T11:35:53Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. ''Springer'', (submitted) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. ''Methods in Molecular Biology'', ''Springer (USA)'', (in press)<br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Lee H, Edwards D. (2017) runBNG: A software package for BioNano genomic analysis on the command line. ''Bioinformatics''. (accepted in June)<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. doi:10.1111/pbi.12742<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=1006 2017-06-04T08:01:03Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. ''Springer'', (submitted) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. ''Methods in Molecular Biology'', ''Springer (USA)'', (in press)<br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Lee H, Edwards, D. (2017) runBNG: A software package for BioNano genomic analysis on the command line. ''Bioinformatics''. (accepted in June)<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. doi:10.1111/pbi.12742<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=1005 2017-06-04T08:00:18Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. ''Springer'', (submitted) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. ''Methods in Molecular Biology'', ''Springer (USA)'', (in press)<br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Lee H, Edwards, D. (2017) runBNG: A software package for BioNano ge-nomic analysis on the command line. ''Bioinformatics''. (accepted in June)<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. doi:10.1111/pbi.12742<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=1004 2017-06-01T07:57:07Z

<p>Yyx8671: /* Research area */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. ''Springer'', (submitted) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. ''Methods in Molecular Biology'', ''Springer (USA)'', (in press)<br /> <br /> *Papers<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. doi:10.1111/pbi.12742<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=992 2017-04-11T00:32:46Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. ''Springer'', (submitted) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. ''Methods in Molecular Biology'', ''Springer (USA)'', (in press)<br /> <br /> *Papers<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. doi:10.1111/pbi.12742<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=991 2017-04-10T01:55:33Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. ''Springer'', (submitted) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. ''Methods in Molecular Biology'', ''Springer (USA)'', (in press)<br /> <br /> *Papers<br /> #Bayer P, Hurgobin B, Golicz A, Chan K, '''Yuan Y''', Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King G, Batley J, Edwards D. (2017) Assembly and comparison of two closely related ''Brassica napus'' genomes. ''Plant Biotechnology Journal''. (accepted in April)<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=985 2017-03-12T04:40:17Z

<p>Yyx8671: </p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. ''Springer'', (submitted) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. ''Methods in Molecular Biology'', ''Springer (USA)'', (in press)<br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doi:10.1016/j.cpb.2016.09.001<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=984 2017-03-12T04:34:45Z

<p>Yyx8671: </p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. ''Springer'', (submitted) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. ''Methods in Molecular Biology'', ''Springer (USA)'', (in press)<br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. ''Trends in Biotechnology''. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. ''Plant Biotechnology Journal''. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. ''Current Plant Biology''. 6: 2-10. doiI:10.1016/j.cpb.2016.09.001<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=983 2017-03-12T04:32:22Z

<p>Yyx8671: </p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. Springer, (submitted) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. Trends in Biotechnology. doi: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. doi: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10. doiI:10.1016/j.cpb.2016.09.001<br /> <br /> *Conference proceedings <br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=982 2017-03-12T04:30:13Z

<p>Yyx8671: </p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Batley J and Edwards D. (2017) Using genomics to adapt crops to climate change. Springer, (submitted) <br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. Trends in Biotechnology. DOI: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. DOI: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10. DOI:10.1016/j.cpb.2016.09.001<br /> <br /> *Posters<br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=981 2017-03-09T09:32:45Z

<p>Yyx8671: </p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. Trends in Biotechnology. DOI: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. DOI: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10. DOI:10.1016/j.cpb.2016.09.001<br /> <br /> *Posters<br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=980 2017-03-09T06:42:56Z

<p>Yyx8671: </p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. Trends in Biotechnology. DOI: 10.1016/j.tibtech.2017.02.009<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. DOI: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10<br /> <br /> *Posters<br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=978 2017-02-15T07:11:00Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #'''Yuan Y''', Bayer P, Batley J, Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. Trends in Biotechnology (accepted)<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. DOI: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10<br /> <br /> *Posters<br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=977 2017-02-10T02:37:08Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. DOI: 10.1111/pbi.12697 <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10<br /> <br /> *Posters<br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=971 2017-01-16T03:04:52Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. (accepted January 2017) <br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10<br /> <br /> *Posters<br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=970 2017-01-16T03:03:14Z

<p>Yyx8671: /* Research area */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The plants involved are ''Brassica napus'', ''Triticum aestivum'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. (accepted January 2017) <br /> <br /> *Posters<br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=969 2017-01-16T03:00:42Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The major plants involved are ''Brassica napus'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. (accepted January 2017) <br /> <br /> *Posters<br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. ''Brassica'' Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=968 2017-01-16T02:59:51Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The major plants involved are ''Brassica napus'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. (accepted January 2017) <br /> <br /> *Posters<br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. Brassica Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=967 2017-01-16T02:59:06Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The major plants involved are ''Brassica napus'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. (accepted January 2017) <br /> <br /> Posters<br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. Brassica Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=966 2017-01-16T02:58:50Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The major plants involved are ''Brassica napus'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. (accepted January 2017) <br /> <br /> 8Posters<br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. Brassica Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=965 2017-01-16T02:57:42Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The major plants involved are ''Brassica napus'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> ===Book chapters===<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> ===Papers===<br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. (accepted January 2017) <br /> <br /> ===Posters===<br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. Brassica Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=964 2017-01-16T02:56:47Z

<p>Yyx8671: /* Awards and Prizes */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The major plants involved are ''Brassica napus'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by the China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. (accepted January 2017) <br /> <br /> *Posters<br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. Brassica Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=963 2017-01-16T02:56:06Z

<p>Yyx8671: /* Research area */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assemblies and then performing structural variation detection between different plant cultivars. The major plants involved are ''Brassica napus'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. (accepted January 2017) <br /> <br /> *Posters<br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. Brassica Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=962 2017-01-16T02:52:25Z

<p>Yyx8671: /* Research area */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My major research is using the improved long read sequencing and optical mapping to improve plant genome assembly and then performing structural variation detection. The major plants involved are ''Brassica napus'' and ''Trifolium subterraneum''.<br /> <br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. (accepted January 2017) <br /> <br /> *Posters<br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. Brassica Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=961 2017-01-16T02:51:10Z

<p>Yyx8671: /* Awards and Prizes */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My research is using the improved long read sequencing and optical mapping to improve plant genome assembly and then performing structural variation detection. The major plants involved are ''Brassica napus'' and ''Trifolium subterraneum''.<br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. (accepted January 2017) <br /> <br /> *Posters<br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. Brassica Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=960 2017-01-16T02:50:37Z

<p>Yyx8671: /* Awards and Prizes */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My research is using the improved long read sequencing and optical mapping to improve plant genome assembly and then performing structural variation detection. The major plants involved are ''Brassica napus'' and ''Trifolium subterraneum''.<br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees China by the University of Western Austraila<br /> <br /> 2015: Postgraduate scholarship by China Scholarship Council.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. (accepted January 2017) <br /> <br /> *Posters<br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. Brassica Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=959 2017-01-16T02:49:11Z

<p>Yyx8671: /* Awards and Prizes */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My research is using the improved long read sequencing and optical mapping to improve plant genome assembly and then performing structural variation detection. The major plants involved are ''Brassica napus'' and ''Trifolium subterraneum''.<br /> ==Awards and Prizes==<br /> 2015: Scholarship for International Research Fees China by University of Western Austraila <br /> 2015: Postgraduate scholarship by China Scholarship Council<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. (accepted January 2017) <br /> <br /> *Posters<br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. Brassica Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=958 2017-01-16T02:43:09Z

<p>Yyx8671: /* Research area */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My research is using the improved long read sequencing and optical mapping to improve plant genome assembly and then performing structural variation detection. The major plants involved are ''Brassica napus'' and ''Trifolium subterraneum''.<br /> ==Awards and Prizes==<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. (accepted January 2017) <br /> <br /> *Posters<br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. Brassica Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=957 2017-01-16T02:40:35Z

<p>Yyx8671: /* Andy Yuan */</p> <hr /> <div>==Academic achievement==<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ==Research area==<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My research is using the improved long read sequencing and optical mapping to improve plant genome assembly and then performing structural variation detection. The major plants involved are ''Brassica napus'' and ''Trifolium subterraneum''.<br /> <br /> ==Publications==<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. (accepted January 2017) <br /> <br /> *Posters<br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. Brassica Conference 2016 Melbourne, PO053<br /> <br /> ==Contact==<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> https://github.com/AppliedBioinformatics</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=956 2017-01-16T02:21:54Z

<p>Yyx8671: /* Andy Yuan */</p> <hr /> <div>== Andy Yuan ==<br /> <br /> ===Academic achievement: ===<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> <br /> <br /> ===Research area===<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My research is using the improved long read sequencing and optical mapping to improve plant genome assembly and then performing structural variation detection. The major plants involved are ''Brassica napus'' and ''Trifolium subterraneum''.<br /> <br /> <br /> <br /> ===Publications===<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. (accepted January 2017) <br /> <br /> *Posters<br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. Brassica Conference 2016 Melbourne, PO053<br /> <br /> <br /> <br /> ===Contact:===<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com<br /> <br /> Github:</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=955 2017-01-16T02:20:56Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>== Andy Yuan ==<br /> <br /> ===Academic achievement: ===<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ===Research area===<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My research is using the improved long read sequencing and optical mapping to improve plant genome assembly and then performing structural variation detection. The major plants involved are ''Brassica napus'' and ''Trifolium subterraneum''.<br /> <br /> ===Publications===<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. (accepted January 2017) <br /> <br /> *Posters<br /> #'''Yuan Y''', Bayer P, Edwards D. (2016) Improving crop genome assemblies using optical mapping and long read sequencing. Brassica Conference 2016 Melbourne, PO053<br /> <br /> ===Contact:===<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=954 2017-01-16T02:15:32Z

<p>Yyx8671: /* Publications */</p> <hr /> <div>== Andy Yuan ==<br /> <br /> ===Academic achievement: ===<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ===Research area===<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My research is using the improved long read sequencing and optical mapping to improve plant genome assembly and then performing structural variation detection. The major plants involved are ''Brassica napus'' and ''Trifolium subterraneum''.<br /> <br /> ===Publications===<br /> <br /> *Book chapters<br /> #'''Yuan Y''', Scheben A, Chan CKK and Edwards D. (2016) Databases for wheat genomics and crop improvement. Methods in Molecular Biology, Springer (USA), (in press)<br /> <br /> *Papers<br /> #Scheben A, '''Yuan Y''', Edwards D. (2016) Advances in genomics for adapting crops to climate change. Current Plant Biology. 6: 2-10<br /> #Kaur P, Bayer P, Milec Z, Vrána J, '''Yuan Y''', Appels R, Edwards D, Batley J, Nichols P, Erskine W, Doležel J. (2017) An advanced reference genome of ''Trifolium subterraneum L''. reveals genes related to agronomic performance. Plant Biotechnology Journal. (accepted January 2017) <br /> <br /> *Posters<br /> <br /> ===Contact:===<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com</div>

Yyx8671 https://appliedbioinformatics.com.au/Edwards/index.php?title=Andy_Yuan&diff=953 2017-01-16T01:58:15Z

<p>Yyx8671: /* Research area */</p> <hr /> <div>== Andy Yuan ==<br /> <br /> ===Academic achievement: ===<br /> <br /> 2015 - present PhD candidate. University of Western Australia (Australia)<br /> <br /> 2014 Master with Honours. University of Queensland (Australia)<br /> <br /> ===Research area===<br /> <br /> Previously, I was doing research in the human genome and cancer at the Institute for Molecular Bioscience (IMB), Univesity of Queensland. <br /> <br /> Now I'm applying the knowledge of bioinformatics and genomics to the study of plants at the University of Western Australia.<br /> <br /> My research is using the improved long read sequencing and optical mapping to improve plant genome assembly and then performing structural variation detection. The major plants involved are ''Brassica napus'' and ''Trifolium subterraneum''.<br /> <br /> ===Publications===<br /> <br /> ===Contact:===<br /> <br /> Andy Yuan<br /> <br /> PhD candidate (Applied Bioinformatics)<br /> <br /> School of Plant Biology<br /> <br /> University of Western Australia <br /> <br /> Perth, WA, 6009<br /> <br /> Australia<br /> <br /> yuxuan.yuan@outlook.com</div>

Yyx8671