https://appliedbioinformatics.com.au/Edwards/index.php?action=history&feed=atom&title=BOLPANGENOME BOLPANGENOME - Revision history 2026-04-30T13:02:01Z Revision history for this page on the wiki MediaWiki 1.28.0 https://appliedbioinformatics.com.au/Edwards/index.php?title=BOLPANGENOME&diff=993&oldid=prev Uqccha18: Replaced content with "This page has been moved to [http://brassicagenome.net/databases.php brassicagenome.net] which contains all our Brassica works." 2017-05-01T08:22:27Z <p>Replaced content with &quot;This page has been moved to [http://brassicagenome.net/databases.php brassicagenome.net] which contains all our Brassica works.&quot;</p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;' lang='en'> <td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td> <td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 08:22, 1 May 2017</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1" >Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>This page <del class="diffchange diffchange-inline">provides access </del>to <del class="diffchange diffchange-inline">Brassica oleracea pangenome data.</del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>This page <ins class="diffchange diffchange-inline">has been moved </ins>to <ins class="diffchange diffchange-inline">[</ins>http://<ins class="diffchange diffchange-inline">brassicagenome</ins>.<ins class="diffchange diffchange-inline">net</ins>/<ins class="diffchange diffchange-inline">databases</ins>.<ins class="diffchange diffchange-inline">php brassicagenome</ins>.<ins class="diffchange diffchange-inline">net] which contains all our Brassica works</ins>.</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>&#160;</div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">Pangenome contigs can be downloaded from: </del>http://<del class="diffchange diffchange-inline">appliedbioinformatics</del>.<del class="diffchange diffchange-inline">com.au</del>/<del class="diffchange diffchange-inline">download/BOLEPan</del>.<del class="diffchange diffchange-inline">contigs</del>.<del class="diffchange diffchange-inline">13062016.fasta.gz</del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; 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font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>&#160;</div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">PAVs in vcf format can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.pav.13062016.vcf.gz</del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>&#160;</div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; 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color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>SNPs can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.snps.13062016.tab.gz</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; 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color:black; text-align: center;">← Older revision</td> <td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 01:04, 8 August 2016</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l10" >Line 10:</td> <td colspan="2" class="diff-lineno">Line 10:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; 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font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">The GBrowse is available from:&#160; http://appliedbioinformatics.com.au/cgi-bin/gb2/gbrowse/BolePan</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">The The BlastGBrowse is available from:&#160; http://appliedbioinformatics.com.au/gbrowseblast</ins></div></td></tr> </table> Agnieszka https://appliedbioinformatics.com.au/Edwards/index.php?title=BOLPANGENOME&diff=871&oldid=prev Agnieszka at 08:52, 13 June 2016 2016-06-13T08:52:54Z <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;' lang='en'> <td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td> <td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 08:52, 13 June 2016</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l10" >Line 10:</td> <td colspan="2" class="diff-lineno">Line 10:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; 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text-decoration: none;"></del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">http://appliedbioinformatics.com.au/gbrowseblast/cgi-bin/index.pl</del></div></td><td colspan="2">&#160;</td></tr> </table> Agnieszka https://appliedbioinformatics.com.au/Edwards/index.php?title=BOLPANGENOME&diff=870&oldid=prev Agnieszka at 08:48, 13 June 2016 2016-06-13T08:48:38Z <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;' lang='en'> <td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td> <td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 08:48, 13 June 2016</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l8" >Line 8:</td> <td colspan="2" class="diff-lineno">Line 8:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>SNPs can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.snps.13062016.tab.gz</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; 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color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>http://appliedbioinformatics.com.au/gbrowseblast/cgi-bin/index.pl</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>http://appliedbioinformatics.com.au/gbrowseblast/cgi-bin/index.pl</div></td></tr> </table> Agnieszka https://appliedbioinformatics.com.au/Edwards/index.php?title=BOLPANGENOME&diff=869&oldid=prev Agnieszka: Created page with "This page provides access to Brassica oleracea pangenome data. Pangenome contigs can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.contigs.13062016.fa..." 2016-06-13T08:46:18Z <p>Created page with &quot;This page provides access to Brassica oleracea pangenome data. Pangenome contigs can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.contigs.13062016.fa...&quot;</p> <p><b>New page</b></p><div>This page provides access to Brassica oleracea pangenome data.<br /> <br /> Pangenome contigs can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.contigs.13062016.fasta.gz<br /> <br /> Pangenome annotation can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.genes.13062016.gff3.gz<br /> <br /> Placement of pangenome contigs along the TO1000 chromosomes can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.contigs.placement.13062016.csv.gz<br /> <br /> SNPs can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.snps.13062016.tab.gz<br /> <br /> Contigs are available for BLAST under:<br /> <br /> http://appliedbioinformatics.com.au/gbrowseblast/cgi-bin/index.pl</div> Agnieszka