Gene and genome annotation - Revision history

Appbio at 03:19, 6 April 2012

2012-04-06T03:19:09Z

Appbio at 04:42, 4 February 2011

2011-02-04T04:42:22Z

Appbio at 00:46, 24 September 2010

2010-09-24T00:46:54Z

Appbio at 07:07, 10 September 2010

2010-09-10T07:07:02Z

Appbio: Created page with "BAC and Gene Annotator Launch [http://flora.acpfg.com.au/bga/ BAC and Gene Annotator] The BAC and Gene Annotator provides a method of discovering information about an unknown s..."

2010-09-10T07:06:20Z

Created page with "BAC and Gene Annotator Launch [http://flora.acpfg.com.au/bga/ BAC and Gene Annotator] The BAC and Gene Annotator provides a method of discovering information about an unknown s..."

New page

BAC and Gene Annotator

Launch [http://flora.acpfg.com.au/bga/ BAC and Gene Annotator]

The BAC and Gene Annotator provides a method of discovering information about an unknown sequence or set of sequences. The Annotator provides data to ascertain sequence function, to determine splice joints, and to find synteny with other genomes.

The Annotator accepts a sequence or a set of sequences and provides a comprehensive listing of all sequence annotations that can be found in similar sequences.

If a single sequence is entered it is assumed to be a BAC with unknown structure. GenScan is used to report putative genes within the sequence, showing location within the input sequence, and splicing. Results for a BAC are displayed graphically.

If either a single sequence or multiple sequences are entered, similar sequences are found using BLAST and the matching sequences are shown. It is possible to match against standard databases or a smaller database selected by the user (eg Arabidopsis thaliana, Rice, Human, Mouse) - see Advanced Options. Results for multiple sequences and similar sequences are shown in tables.

← Older revision		Revision as of 03:19, 6 April 2012
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−	Back to [[~~research~~\|~~research projects~~]]	+	Back to [[Main_Page\|main page]]

← Older revision		Revision as of 04:42, 4 February 2011
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	Launch [http://flora.acpfg.com.au/bga/ BAC and Gene Annotator]		Launch [http://flora.acpfg.com.au/bga/ BAC and Gene Annotator]
		+
		+	or new [http://appliedbioinformatics.com.au/projects/bga/ BGAII Turbo!]

	The BAC and Gene Annotator provides a method of discovering information about an unknown sequence or set of sequences. The Annotator provides data to ascertain sequence function, to determine splice joints, and to find synteny with other genomes.		The BAC and Gene Annotator provides a method of discovering information about an unknown sequence or set of sequences. The Annotator provides data to ascertain sequence function, to determine splice joints, and to find synteny with other genomes.

← Older revision		Revision as of 00:46, 24 September 2010
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	If either a single sequence or multiple sequences are entered, similar sequences are found using BLAST and the matching sequences are shown. It is possible to match against standard databases or a smaller database selected by the user (eg Arabidopsis thaliana, Rice, Human, Mouse) - see Advanced Options. Results for multiple sequences and similar sequences are shown in tables.		If either a single sequence or multiple sequences are entered, similar sequences are found using BLAST and the matching sequences are shown. It is possible to match against standard databases or a smaller database selected by the user (eg Arabidopsis thaliana, Rice, Human, Mouse) - see Advanced Options. Results for multiple sequences and similar sequences are shown in tables.
		+

	Back to [[research\|research projects]]		Back to [[research\|research projects]]

← Older revision		Revision as of 07:07, 10 September 2010
Line 10:		Line 10:

	If either a single sequence or multiple sequences are entered, similar sequences are found using BLAST and the matching sequences are shown. It is possible to match against standard databases or a smaller database selected by the user (eg Arabidopsis thaliana, Rice, Human, Mouse) - see Advanced Options. Results for multiple sequences and similar sequences are shown in tables.		If either a single sequence or multiple sequences are entered, similar sequences are found using BLAST and the matching sequences are shown. It is possible to match against standard databases or a smaller database selected by the user (eg Arabidopsis thaliana, Rice, Human, Mouse) - see Advanced Options. Results for multiple sequences and similar sequences are shown in tables.
		+
		+	Back to [[research\|research projects]]