Seagrass Zmu Genome - Revision history

Jennylee at 03:49, 16 April 2018

2018-04-16T03:49:44Z

Jennylee at 03:49, 16 April 2018

2018-04-16T03:49:21Z

Jennylee at 02:33, 30 May 2017

2017-05-30T02:33:56Z

Jennylee at 03:51, 4 May 2016

2016-05-04T03:51:53Z

Philippbayer at 02:01, 26 April 2016

2016-04-26T02:01:34Z

Jennylee at 08:18, 21 April 2016

2016-04-21T08:18:33Z

Jennylee at 06:42, 18 April 2016

2016-04-18T06:42:19Z

Jennylee at 02:31, 18 April 2016

2016-04-18T02:31:16Z

Jennylee at 02:29, 18 April 2016

2016-04-18T02:29:07Z

Jennylee at 02:26, 18 April 2016

2016-04-18T02:26:58Z

@@ Line 7: / Line 7: @@
 OR as below
 The draft assembly can be downloaded from:
 :[http://appliedbioinformatics.com.au/download/Zmu_v1_scaffolds.fa.tar.gz Scaffolds]
 The predicted genes in proteins, transcripts and CDS can be downloaded from:
@@ Line 20: / Line 20: @@
 :[http://appliedbioinformatics.com.au/download/Zmu_v1_cds.fa.tar.gz CDS]
 The gene models reported by MAKER in the format of gff can be downloaded from:
 :[http://appliedbioinformatics.com.au/download/Zmu_v1_maker.gff.tar.gz Gene_models]
 The domains annotation of predicted proteins in the format of gff can be downloaded from:
 :[http://appliedbioinformatics.com.au/download/Zmu_v1_interproscan_of_proteins.gff.tar.gz Domains_annotation]
 The tab-deliminated text file for orthologous groups between five species can be downloaded from:
 :[http://appliedbioinformatics.com.au/download/Zmu_v1_orthomclgroups.txt.tar.gz Orthogroups]

← Older revision		Revision as of 03:49, 16 April 2018
Line 2:		Line 2:
	http://www.plantphysiol.org/content/172/1/272.full.pdf+html		http://www.plantphysiol.org/content/172/1/272.full.pdf+html

		+	Data DOI: 10.4225/23/5ad41a6c77b60
		+
		+	Full records of data is viewable and downloadable here: http://research-repository.uwa.edu.au/en/datasets/zostera-muelleri-seagrass-genome-data(83e77b30-9044-4012-b9c7-b0b97827c989).html
		+
		+	OR as below

	The draft assembly can be downloaded from:		The draft assembly can be downloaded from:

← Older revision		Revision as of 02:33, 30 May 2017
Line 1:		Line 1:
	This page provides access to ''Zostera muelleri'' genome assembly and annotation data for the paper Lee et al. 2016.		This page provides access to ''Zostera muelleri'' genome assembly and annotation data for the paper Lee et al. 2016.
		+	http://www.plantphysiol.org/content/172/1/272.full.pdf+html

← Older revision		Revision as of 03:51, 4 May 2016
Line 24:		Line 24:


−	The tab-deliminated text file for orthologous groups between five species can be downloaded from	+	The tab-deliminated text file for orthologous groups between five species can be downloaded from:
	:[http://appliedbioinformatics.com.au/download/Zmu_v1_orthomclgroups.txt.tar.gz Orthogroups]		:[http://appliedbioinformatics.com.au/download/Zmu_v1_orthomclgroups.txt.tar.gz Orthogroups]

← Older revision		Revision as of 02:01, 26 April 2016
Line 25:		Line 25:

	The tab-deliminated text file for orthologous groups between five species can be downloaded from		The tab-deliminated text file for orthologous groups between five species can be downloaded from
−	:[http://appliedbioinformatics.com.au/download/~~Zmu_orthogroups~~.txt.tar.gz Orthogroups]	+	:[http://appliedbioinformatics.com.au/download/Zmu_v1_orthomclgroups.txt.tar.gz Orthogroups]

@@ Line 4: / Line 4: @@
 The draft assembly can be downloaded from:
-:[http://appliedbioinformatics.com.au/download/Zmu_assembly.fa.tar.gz Scaffolds]
+:[http://appliedbioinformatics.com.au/download/Zmu_v1_scaffolds.fa.tar.gz Scaffolds]
 The predicted genes in proteins, transcripts and CDS can be downloaded from:
-:[http://appliedbioinformatics.com.au/download/Zmu_protein.fa.tar.gz Proteins]
+:[http://appliedbioinformatics.com.au/download/Zmu_v1_protein.fa.tar.gz Proteins]
-:[http://appliedbioinformatics.com.au/download/Zmu_transcript.fa.tar.gz Transcripts]
+:[http://appliedbioinformatics.com.au/download/Zmu_v1_transcript.fa.tar.gz Transcripts]
-:[http://appliedbioinformatics.com.au/download/Zmu_cds.fa.tar.gz CDS]
+:[http://appliedbioinformatics.com.au/download/Zmu_v1_cds.fa.tar.gz CDS]
 The gene models reported by MAKER in the format of gff can be downloaded from:
-:[http://appliedbioinformatics.com.au/download/Zmu_maker.gff3.tar.gz Gene_models]
+:[http://appliedbioinformatics.com.au/download/Zmu_v1_maker.gff.tar.gz Gene_models]
 The domains annotation of predicted proteins in the format of gff can be downloaded from:
-:[http://appliedbioinformatics.com.au/download/Zmu_iprs.gff3.tar.gz Domains_annotation]
+:[http://appliedbioinformatics.com.au/download/Zmu_v1_interproscan_of_proteins.gff.tar.gz Domains_annotation]
 The tab-deliminated text file for orthologous groups between five species can be downloaded from
 :[http://appliedbioinformatics.com.au/download/Zmu_orthogroups.txt.tar.gz Orthogroups]

← Older revision		Revision as of 02:29, 18 April 2016
Line 14:		Line 14:

	:[http://appliedbioinformatics.com.au/download/Zmu_cds.fa.tar.gz CDS]		:[http://appliedbioinformatics.com.au/download/Zmu_cds.fa.tar.gz CDS]
		+
		+
		+	The gene models reported by MAKER in the format of gff can be downloaded from:
		+
		+
		+
		+	The orthologous groups between five species can be downloaded from: