TAGdb - Revision history

Uqccha18 at 00:56, 7 August 2014

2014-08-07T00:56:23Z

Uqccha18 at 00:39, 7 August 2014

2014-08-07T00:39:00Z

Uqccha18 at 00:18, 30 October 2013

2013-10-30T00:18:37Z

Uqccha18 at 00:17, 30 October 2013

2013-10-30T00:17:14Z

Appbio at 05:31, 14 November 2011

2011-11-14T05:31:41Z

Appbio at 05:05, 28 September 2010

2010-09-28T05:05:33Z

Appbio at 05:04, 28 September 2010

2010-09-28T05:04:59Z

Appbio at 05:01, 28 September 2010

2010-09-28T05:01:41Z

Appbio: Created page with "TAGdb is a web-based query tool for aligning query sequences to an existing database of paired short read data. The system has been developed using Perl and MySQL and runs on a p..."

2010-09-28T05:01:24Z

Created page with "TAGdb is a web-based query tool for aligning query sequences to an existing database of paired short read data. The system has been developed using Perl and MySQL and runs on a p..."

New page

TAGdb is a web-based query tool for aligning query sequences to an existing database of paired short read data. The system has been developed using Perl and MySQL and runs on a public web server [http://flora.acpfg.com.au/tagdb/]. The interface allows researchers to upload or input a FASTA formatted nucleotide sequence up to 5000 base pairs long for comparison with one or more paired read sequence libraries.

← Older revision		Revision as of 00:56, 7 August 2014
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−	'''TAGdb''' is a web-based query tool for aligning query sequences to an existing database of paired short read data. The system has been developed using Perl and MySQL and runs on a public web server [http://sequencetagdb.info~~/tagdb~~ TAGdb].	+	'''TAGdb''' is a web-based query tool for aligning query sequences to an existing database of paired short read data. The system has been developed using Perl and MySQL and runs on a public web server [http://sequencetagdb.info TAGdb].

	The interface allows researchers to upload or input a FASTA formatted nucleotide sequence up to 5000 base pairs long for comparison with one or more paired read sequence libraries. TAGdb is a public tool and we are happy to host public data. Pease contact [[David Edwards]] for details.		The interface allows researchers to upload or input a FASTA formatted nucleotide sequence up to 5000 base pairs long for comparison with one or more paired read sequence libraries. TAGdb is a public tool and we are happy to host public data. Pease contact [[David Edwards]] for details.

← Older revision		Revision as of 00:39, 7 August 2014
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−	'''TAGdb''' is a web-based query tool for aligning query sequences to an existing database of paired short read data. The system has been developed using Perl and MySQL and runs on a public web server [http://~~130~~.~~102.154.90~~/tagdb TAGdb].	+	'''TAGdb''' is a web-based query tool for aligning query sequences to an existing database of paired short read data. The system has been developed using Perl and MySQL and runs on a public web server [http://sequencetagdb.info/tagdb TAGdb].

	The interface allows researchers to upload or input a FASTA formatted nucleotide sequence up to 5000 base pairs long for comparison with one or more paired read sequence libraries. TAGdb is a public tool and we are happy to host public data. Pease contact [[David Edwards]] for details.		The interface allows researchers to upload or input a FASTA formatted nucleotide sequence up to 5000 base pairs long for comparison with one or more paired read sequence libraries. TAGdb is a public tool and we are happy to host public data. Pease contact [[David Edwards]] for details.

← Older revision		Revision as of 00:18, 30 October 2013
Line 1:		Line 1:
−	'''TAGdb''' is a web-based query tool for aligning query sequences to an existing database of paired short read data. The system has been developed using Perl and MySQL and runs on a public web server http://130.102.154.90/tagdb.	+	'''TAGdb''' is a web-based query tool for aligning query sequences to an existing database of paired short read data. The system has been developed using Perl and MySQL and runs on a public web server [http://130.102.154.90/tagdb TAGdb].

	The interface allows researchers to upload or input a FASTA formatted nucleotide sequence up to 5000 base pairs long for comparison with one or more paired read sequence libraries. TAGdb is a public tool and we are happy to host public data. Pease contact [[David Edwards]] for details.		The interface allows researchers to upload or input a FASTA formatted nucleotide sequence up to 5000 base pairs long for comparison with one or more paired read sequence libraries. TAGdb is a public tool and we are happy to host public data. Pease contact [[David Edwards]] for details.

← Older revision		Revision as of 00:17, 30 October 2013
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−	'''TAGdb''' is a web-based query tool for aligning query sequences to an existing database of paired short read data. The system has been developed using Perl and MySQL and runs on a public web server http://~~flora~~.~~acpfg~~.~~com~~.au/tagdb/.	+	'''TAGdb''' is a web-based query tool for aligning query sequences to an existing database of paired short read data. The system has been developed using Perl and MySQL and runs on a public web server http://130.102.154.90/tagdb.

	The interface allows researchers to upload or input a FASTA formatted nucleotide sequence up to 5000 base pairs long for comparison with one or more paired read sequence libraries. TAGdb is a public tool and we are happy to host public data. Pease contact [[David Edwards]] for details.		The interface allows researchers to upload or input a FASTA formatted nucleotide sequence up to 5000 base pairs long for comparison with one or more paired read sequence libraries. TAGdb is a public tool and we are happy to host public data. Pease contact [[David Edwards]] for details.

← Older revision		Revision as of 05:31, 14 November 2011
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	* Marshall DJ, Hayward A, Eales D, Imelfort M, Stiller J, Berkman PJ, Clark T, McKenzie M, Lai K, Duran C, Batley J and Edwards D. (2010) Targeted identification of genomic regions using TAGdb. [http://www.plantmethods.com/content/6/1/19 Plant Methods 6:19]		* Marshall DJ, Hayward A, Eales D, Imelfort M, Stiller J, Berkman PJ, Clark T, McKenzie M, Lai K, Duran C, Batley J and Edwards D. (2010) Targeted identification of genomic regions using TAGdb. [http://www.plantmethods.com/content/6/1/19 Plant Methods 6:19]
		+
		+	Back to [[Main_Page]]

@@ Line 1: / Line 1: @@
-TAGdb is a web-based query tool for aligning query sequences to an existing database of paired short read data. The system has been developed using Perl and MySQL and runs on a public web server http://flora.acpfg.com.au/tagdb/.
+'''TAGdb''' is a web-based query tool for aligning query sequences to an existing database of paired short read data. The system has been developed using Perl and MySQL and runs on a public web server http://flora.acpfg.com.au/tagdb/.
-The interface allows researchers to upload or input a FASTA formatted nucleotide sequence up to 5000 base pairs long for comparison with one or more paired read sequence libraries.
+The interface allows researchers to upload or input a FASTA formatted nucleotide sequence up to 5000 base pairs long for comparison with one or more paired read sequence libraries. TAGdb is a public tool and we are happy to host public data. Pease contact [[David Edwards]] for details.
-Further information on TAGdb can be found in the publication:
+'''Further information on TAGdb can be found in the publication:'''
 * Marshall DJ, Hayward A, Eales D, Imelfort M, Stiller J, Berkman PJ, Clark T, McKenzie M, Lai K, Duran C, Batley J and Edwards D. (2010) Targeted identification of genomic regions using TAGdb. [http://www.plantmethods.com/content/6/1/19 Plant Methods 6:19]

← Older revision		Revision as of 05:04, 28 September 2010
Line 1:		Line 1:
−	TAGdb is a web-based query tool for aligning query sequences to an existing database of paired short read data. The system has been developed using Perl and MySQL and runs on a public web server http://flora.acpfg.com.au/tagdb/. The interface allows researchers to upload or input a FASTA formatted nucleotide sequence up to 5000 base pairs long for comparison with one or more paired read sequence libraries.	+	TAGdb is a web-based query tool for aligning query sequences to an existing database of paired short read data. The system has been developed using Perl and MySQL and runs on a public web server http://flora.acpfg.com.au/tagdb/.
		+
		+	The interface allows researchers to upload or input a FASTA formatted nucleotide sequence up to 5000 base pairs long for comparison with one or more paired read sequence libraries.
		+
		+	TAGdb is a public tool and we are happy to host public data. Pease contact [[David Edwards]] for details.
		+
		+	Further information on TAGdb can be found in the publication:
		+
		+	* Marshall DJ, Hayward A, Eales D, Imelfort M, Stiller J, Berkman PJ, Clark T, McKenzie M, Lai K, Duran C, Batley J and Edwards D. (2010) Targeted identification of genomic regions using TAGdb. [http://www.plantmethods.com/content/6/1/19 Plant Methods 6:19]

← Older revision		Revision as of 05:01, 28 September 2010
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−	TAGdb is a web-based query tool for aligning query sequences to an existing database of paired short read data. The system has been developed using Perl and MySQL and runs on a public web server [http://flora.acpfg.com.au/tagdb/]. The interface allows researchers to upload or input a FASTA formatted nucleotide sequence up to 5000 base pairs long for comparison with one or more paired read sequence libraries.	+	TAGdb is a web-based query tool for aligning query sequences to an existing database of paired short read data. The system has been developed using Perl and MySQL and runs on a public web server http://flora.acpfg.com.au/tagdb/. The interface allows researchers to upload or input a FASTA formatted nucleotide sequence up to 5000 base pairs long for comparison with one or more paired read sequence libraries.