Difference between revisions of "Seagrass Zmu Genome"
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This page provides access to ''Zostera muelleri'' genome assembly and annotation data for the paper Lee et al. 2016. | This page provides access to ''Zostera muelleri'' genome assembly and annotation data for the paper Lee et al. 2016. | ||
| + | http://www.plantphysiol.org/content/172/1/272.full.pdf+html | ||
| − | + | Data DOI: 10.4225/23/5ad41a6c77b60 | |
| − | + | Full records of data is viewable and downloadable here: http://research-repository.uwa.edu.au/en/datasets/zostera-muelleri-seagrass-genome-data(83e77b30-9044-4012-b9c7-b0b97827c989).html | |
| − | + | OR as below | |
| − | |||
| − | + | The draft assembly can be downloaded from: | |
| − | CDS [http://appliedbioinformatics.com.au/download/ | + | :[http://appliedbioinformatics.com.au/download/Zmu_v1_scaffolds.fa.tar.gz Scaffolds] |
| + | |||
| + | The predicted genes in proteins, transcripts and CDS can be downloaded from: | ||
| + | |||
| + | :[http://appliedbioinformatics.com.au/download/Zmu_v1_protein.fa.tar.gz Proteins] | ||
| + | |||
| + | :[http://appliedbioinformatics.com.au/download/Zmu_v1_transcript.fa.tar.gz Transcripts] | ||
| + | |||
| + | :[http://appliedbioinformatics.com.au/download/Zmu_v1_cds.fa.tar.gz CDS] | ||
| + | |||
| + | The gene models reported by MAKER in the format of gff can be downloaded from: | ||
| + | :[http://appliedbioinformatics.com.au/download/Zmu_v1_maker.gff.tar.gz Gene_models] | ||
| + | |||
| + | The domains annotation of predicted proteins in the format of gff can be downloaded from: | ||
| + | :[http://appliedbioinformatics.com.au/download/Zmu_v1_interproscan_of_proteins.gff.tar.gz Domains_annotation] | ||
| + | |||
| + | The tab-deliminated text file for orthologous groups between five species can be downloaded from: | ||
| + | :[http://appliedbioinformatics.com.au/download/Zmu_v1_orthomclgroups.txt.tar.gz Orthogroups] | ||
Latest revision as of 03:49, 16 April 2018
This page provides access to Zostera muelleri genome assembly and annotation data for the paper Lee et al. 2016. http://www.plantphysiol.org/content/172/1/272.full.pdf+html
Data DOI: 10.4225/23/5ad41a6c77b60
Full records of data is viewable and downloadable here: http://research-repository.uwa.edu.au/en/datasets/zostera-muelleri-seagrass-genome-data(83e77b30-9044-4012-b9c7-b0b97827c989).html
OR as below
The draft assembly can be downloaded from:
The predicted genes in proteins, transcripts and CDS can be downloaded from:
The gene models reported by MAKER in the format of gff can be downloaded from:
The domains annotation of predicted proteins in the format of gff can be downloaded from:
The tab-deliminated text file for orthologous groups between five species can be downloaded from:
