Difference between revisions of "Plant bioinformatics 2"

Revision as of 23:42, 5 November 2013

We are currently preparing a second edition of the volume ‘Plant Bioinformatics’ to be published by Humana Press (Springer).

This volume in the popular Methods in Molecular Biology series is a follow up to the first edition published in 2007. The first edition proved extremely popular, and for this second edition, I plan to maintain a similar structure. Some chapters will be the same as the original edition, but updated to ensure that they are current, while new chapters will be introduced to reflect changes in plant bioinformatics since 2007. Details of the first edition are available here: http://www.amazon.com/Plant-Bioinformatics-Methods-Protocols-Molecular/dp/1588296539

A current list of accepted authors and chapter titles is below:

• Eric Sayers, Using Genbank
• Ioannis Xenarios, Uniprot/Swissprot
• Tim Close, Harvest
• Paul Kersey, Ensembl plants
• Andrew Farmer, LIS
• Doreen Ware, Gramene
• Doreen Ware, iPlant
• Doreen Ware, DNA subway
• Pankaj Jaiswal, Plant Ontology
• Pankaj Jaiswal, PlantReactome
• Carolyn Lawrence, MaizeGDB
• Minoru Kanehisa, KEGG
• Lukas Mueller , SGN (Solanaceae Genome Network), Cassavabase and others
• Dorrie Main, GDR (Genome Database for Rosaceae)
• Andrew Sharpe, GbyS - RAD
• Philipp Bayer, GbyS skim
• Jacques Nicolas, Characterising repeats in genomes
• Lars Smits, GBrowse viewers - implementation
• Kaitao Lai, wheatgenome.info
• Xiaowu Wang, Brassica rapa database
• Micha Bayer, Tablet/Flapjack
• Bhavna Hurgobin, Mapping reads with SOAP
• Klaus Mayer, PlantsDB
• Pradeep Ruperao, TAGdb (submitted)