Difference between revisions of "BOLPANGENOME"
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SNPs can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.snps.13062016.tab.gz | SNPs can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.snps.13062016.tab.gz | ||
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| + | List of TE related genes can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.TE.realated.genes.13062016.gz | ||
Contigs are available for BLAST under: | Contigs are available for BLAST under: | ||
http://appliedbioinformatics.com.au/gbrowseblast/cgi-bin/index.pl | http://appliedbioinformatics.com.au/gbrowseblast/cgi-bin/index.pl | ||
Revision as of 08:48, 13 June 2016
This page provides access to Brassica oleracea pangenome data.
Pangenome contigs can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.contigs.13062016.fasta.gz
Pangenome annotation can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.genes.13062016.gff3.gz
Placement of pangenome contigs along the TO1000 chromosomes can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.contigs.placement.13062016.csv.gz
SNPs can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.snps.13062016.tab.gz
List of TE related genes can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.TE.realated.genes.13062016.gz
Contigs are available for BLAST under:
http://appliedbioinformatics.com.au/gbrowseblast/cgi-bin/index.pl
