Difference between revisions of "Darmor Tapidor"
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[http://appliedbioinformatics.com.au/download/DarmorTapidor/ListOfBadPfamDomains.txt List of Transposase related PFAM IDs] | [http://appliedbioinformatics.com.au/download/DarmorTapidor/ListOfBadPfamDomains.txt List of Transposase related PFAM IDs] | ||
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=== Tapidor === | === Tapidor === | ||
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No AED=1 scores, transcripts longer than 100 bp, no Transposase domains | No AED=1 scores, transcripts longer than 100 bp, no Transposase domains | ||
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| − | [http://appliedbioinformatics.com.au/download/DarmorTapidor/Darmor_v81_assembly.all.maker. | + | [http://appliedbioinformatics.com.au/download/DarmorTapidor/Darmor_v81_assembly.augustus_masked_filtered.gff.gz Darmor_v81_assembly.augustus_masked_filtered.gff.gz] - filtered predicted annotation in GFF format |
| + | |||
| + | [http://appliedbioinformatics.com.au/download/DarmorTapidor/Darmor_v81_assembly.all.maker.augustus_masked.transcripts_filtered.fasta.gz Darmor_v81_assembly.all.maker.augustus_masked.transcripts_filtered.fasta.gz] - filtered predicted transcripts | ||
| + | |||
| + | [http://appliedbioinformatics.com.au/download/DarmorTapidor/Darmor_v81_assembly.all.maker.augustus_masked.proteins_filtered.fasta.gz Darmor_v81_assembly.all.maker.augustus_masked.proteins_filtered.fasta.gz] - filtered predicted proteins | ||
| − | [http://appliedbioinformatics.com.au/download/DarmorTapidor/Darmor_v81_assembly.all.maker. | + | [http://appliedbioinformatics.com.au/download/DarmorTapidor/Darmor_v81_assembly.all.maker.snap_masked.proteins_Pfam_results.gff.gz Darmor_v81_assembly.all.maker.snap_masked.proteins_Pfam_results.gff.gz] - PFam results for filtered predicted proteins |
Revision as of 08:10, 9 September 2016
This page collects the files for Bayer et al. B. napus Darmor/Tapidor genome paper
Contents
Software
Collinearity analysis - Collinearity_scripts.zip
LASTZSorter.py LASTZSorter.py
Annotation
List of Transposase related PFAM IDs
Tapidor
Tapidor_v63_assembly.fasta.gz - assembly as pseudo-molecules
Filtered annotation
No AED=1 scores, transcripts longer than 100 bp, no Transposase domains
Tapidor_v63_assembly.augustus_masked_filtered.gff.gz - filtered predicted annotation in GFF format
Tapidor_v63_assembly.all.maker.augustus_masked.transcripts_filtered.fasta.gz - filtered predicted transcripts
Tapidor_v63_assembly.all.maker.augustus_masked.proteins_filtered.fasta.gz - filtered predicted proteins
Tapidor_v63_assembly.all.maker.snap_masked.proteins_Pfam_results.gff.gz - PFam results for filtered predicted proteins
Darmor
Filtered annotation
No AED=1 scores, transcripts longer than 100 bp, no Transposase domains
Darmor_v81_assembly.augustus_masked_filtered.gff.gz - filtered predicted annotation in GFF format
Darmor_v81_assembly.all.maker.augustus_masked.transcripts_filtered.fasta.gz - filtered predicted transcripts
Darmor_v81_assembly.all.maker.augustus_masked.proteins_filtered.fasta.gz - filtered predicted proteins
Darmor_v81_assembly.all.maker.snap_masked.proteins_Pfam_results.gff.gz - PFam results for filtered predicted proteins
