Difference between revisions of "BOLPANGENOME"

Revision as of 06:47, 22 December 2016

This page provides access to Brassica oleracea pangenome data.

Pangenome contigs can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.contigs.13062016.fasta.gz

Pangenome annotation can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.genes.13062016.gff3.gz

Pangenome annotation CDS sequences are here: http://appliedbioinformatics.com.au/download/BOLEPan.genes.13062016.cds.fasta.gz

Pangenome annotation peptide sequences are here: http://appliedbioinformatics.com.au/download/BOLEPan.genes.13062016.pep.fasta.gz

Placement of pangenome contigs along the TO1000 chromosomes can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.contigs.placement.13062016.csv.gz

SNPs can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.snps.13062016.tab.gz

SNPs in vcf format can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.snps.13062016.vcf.gz

PAVs in vcf format can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.pav.13062016.vcf.gz

List of TE related genes can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.TE.realated.genes.13062016.gz

The GBrowse is available from: http://appliedbioinformatics.com.au/cgi-bin/gb2/gbrowse/BolePan

The The BlastGBrowse is available from: http://appliedbioinformatics.com.au/gbrowseblast