Difference between revisions of "BOLPANGENOME"

Latest revision as of 08:22, 1 May 2017

This page has been moved to brassicagenome.net which contains all our Brassica works.

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-This page provides access to Brassica oleracea pangenome data.
+This page has been moved to [http://brassicagenome.net/databases.php brassicagenome.net] which contains all our Brassica works.
-Pangenome contigs can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.contigs.13062016.fasta.gz
-Pangenome annotation can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.genes.13062016.gff3.gz
-Placement of pangenome contigs along the TO1000 chromosomes can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.contigs.placement.13062016.csv.gz
-SNPs can be downloaded from: http://appliedbioinformatics.com.au/download/BOLEPan.snps.13062016.tab.gz
-List of TE related genes can be downloaded from:  http://appliedbioinformatics.com.au/download/BOLEPan.TE.realated.genes.13062016.gz
-Contigs are available for BLAST under:
-http://appliedbioinformatics.com.au/gbrowseblast/cgi-bin/index.pl