Difference between revisions of "Yam bean assembly"

Latest revision as of 06:47, 21 November 2022

This page provides access to The Yam bean genome assembly and annotation data for the paper Tay Fernandez et al 2021.

The raw sequencing reads are available at PRJNA713851 and DOI is available here

The draft assembly can be downloaded from here:

The annotation (GTF) is here:

The transcripts (fasta) are here:

The SNPs (VCF) are here:

The final filtered SNPs (VCF) are here:

@@ Line 1: / Line 1: @@
 This page provides access to ''The Yam bean'' genome assembly and annotation data for the paper Tay Fernandez et al 2021.
-Data DOI:
+The raw sequencing reads are available at [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA713851 PRJNA713851] and
+DOI is available [https://research-repository.uwa.edu.au/en/datasets/yam-bean-draft-genome-assembly-and-snp-data here]
-Full records of data is viewable and downloadable here:
+The draft assembly can be downloaded from here:
+[http://appliedbioinformatics.com.au/download/yambean.scf.fasta.gz yambean.scf.fasta.gz]
-The draft assembly can be downloaded from:
+The annotation (GTF) is here:
-The predicted genes in proteins, transcripts and CDS can be downloaded from:
+[http://appliedbioinformatics.com.au/download/1000yambeanscaffold.gtf.gz 1000yambeanscaffold.gtf.gz]
+The transcripts (fasta) are here:
+[http://appliedbioinformatics.com.au/download/yambean_transcripts.fa.gz yambean_transcripts.fa.gz]
+The SNPs (VCF) are here:
+[http://appliedbioinformatics.com.au/download/yambean.vcf.gz yambean.vcf.gz]
+The final filtered SNPs (VCF) are here:
+[http://appliedbioinformatics.com.au/download/yambean_filtered.vcf.gz yambean_filtered.vcf.gz]