Difference between revisions of "TAGdb"
From Applied Bioinformatics Group
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| − | TAGdb is a web-based query tool for aligning query sequences to an existing database of paired short read data. The system has been developed using Perl and MySQL and runs on a public web server http://flora.acpfg.com.au/tagdb/. | + | '''TAGdb''' is a web-based query tool for aligning query sequences to an existing database of paired short read data. The system has been developed using Perl and MySQL and runs on a public web server http://flora.acpfg.com.au/tagdb/. |
| − | The interface allows researchers to upload or input a FASTA formatted nucleotide sequence up to 5000 base pairs long for comparison with one or more paired read sequence libraries. | + | The interface allows researchers to upload or input a FASTA formatted nucleotide sequence up to 5000 base pairs long for comparison with one or more paired read sequence libraries. TAGdb is a public tool and we are happy to host public data. Pease contact [[David Edwards]] for details. |
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| − | Further information on TAGdb can be found in the publication: | + | '''Further information on TAGdb can be found in the publication:''' |
* Marshall DJ, Hayward A, Eales D, Imelfort M, Stiller J, Berkman PJ, Clark T, McKenzie M, Lai K, Duran C, Batley J and Edwards D. (2010) Targeted identification of genomic regions using TAGdb. [http://www.plantmethods.com/content/6/1/19 Plant Methods 6:19] | * Marshall DJ, Hayward A, Eales D, Imelfort M, Stiller J, Berkman PJ, Clark T, McKenzie M, Lai K, Duran C, Batley J and Edwards D. (2010) Targeted identification of genomic regions using TAGdb. [http://www.plantmethods.com/content/6/1/19 Plant Methods 6:19] | ||
Revision as of 05:05, 28 September 2010
TAGdb is a web-based query tool for aligning query sequences to an existing database of paired short read data. The system has been developed using Perl and MySQL and runs on a public web server http://flora.acpfg.com.au/tagdb/.
The interface allows researchers to upload or input a FASTA formatted nucleotide sequence up to 5000 base pairs long for comparison with one or more paired read sequence libraries. TAGdb is a public tool and we are happy to host public data. Pease contact David Edwards for details.
Further information on TAGdb can be found in the publication:
- Marshall DJ, Hayward A, Eales D, Imelfort M, Stiller J, Berkman PJ, Clark T, McKenzie M, Lai K, Duran C, Batley J and Edwards D. (2010) Targeted identification of genomic regions using TAGdb. Plant Methods 6:19
