Difference between revisions of "Darmor Tapidor"
Philippbayer (talk | contribs) (→Results data files) |
Philippbayer (talk | contribs) (→Results data files) |
||
| Line 9: | Line 9: | ||
contigPlacer [https://github.com/philippbayer/contigplacer contigPlacer] | contigPlacer [https://github.com/philippbayer/contigplacer contigPlacer] | ||
| − | == Results | + | == Results == |
[http://appliedbioinformatics.com.au/download/DarmorTapidor/MSTMap_Results.txt.gz Genetic map from MSTMap] | [http://appliedbioinformatics.com.au/download/DarmorTapidor/MSTMap_Results.txt.gz Genetic map from MSTMap] | ||
Revision as of 07:16, 30 September 2016
This page collects the files for Bayer et al. B. napus Darmor/Tapidor genome paper
Contents
Software
Collinearity analysis - Collinearity_scripts.zip
LASTZSorter.py LASTZSorter.py
contigPlacer contigPlacer
Results
Darmor SNPs anchored on Darmor v8.1 reference
Tapidor SNPs anchored on Tapidor v6.3 reference
Annotation
List of Transposase related PFAM IDs used for filtering
Tapidor
Tapidor_v63_assembly.fasta.gz - assembly as pseudo-molecules
Filtered annotation
No AED=1 scores, transcripts longer than 100 bp, no Transposase domains
Tapidor_v63_assembly.augustus_masked_filtered.gff.gz - filtered predicted annotation in GFF format
Tapidor_v63_assembly.all.maker.augustus_masked.transcripts_filtered.fasta.gz - filtered predicted transcripts
Tapidor_v63_assembly.all.maker.augustus_masked.proteins_filtered.fasta.gz - filtered predicted proteins
Tapidor_v63_assembly.all.maker.augustus_masked.proteins_Pfam_results.gff.gz - PFam results for filtered predicted proteins
Darmor
Darmlr_v81_assembly_fasta.gz - assembly as pseudomolecules
Filtered annotation
No AED=1 scores, transcripts longer than 100 bp, no Transposase domains
Darmor_v81_assembly.augustus_masked_filtered.gff.gz - filtered predicted annotation in GFF format
Darmor_v81_assembly.all.maker.augustus_masked.transcripts_filtered.fasta.gz - filtered predicted transcripts
Darmor_v81_assembly.all.maker.augustus_masked.proteins_filtered.fasta.gz - filtered predicted proteins
Darmor_v81_assembly.all.maker.augustus_masked.proteins_Pfam_results.gff.gz - PFam results for filtered predicted proteins
