Difference between revisions of "Publications KC"

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Publications - Kenneth Chan

JOURNAL ARTICLES:

1. Chan C-KK, Halgamuge SK: A New Generalized Growth Threshold for Dynamic SOM for Comparing Average Mutual Information and Oligonucleotide Frequency as a Species Signature International Journal of Bio-Science and Bio-Technology (IJBSBT), Vol. 1, No. 1, Dec 2009, Pg 1~10
2. Chan C-KK, Hsu AL, Halgamuge SK, Tang S-L: Binning sequences using very sparse labels within a metagenome BMC Bioinformatics 2008, 9(215): doi:10.1186/1471-2105-1189-1215.
3. Chan C-KK, Hsu AL, Tang S-L, Halgamuge SK: Using Growing Self-Organising Maps to Improve the Binning Process in Environmental Whole-Genome Shotgun Sequencing Journal of Biomedicine and Biotechnology 2008, vol. 2008, Article ID 513701:10 pages. doi:10.1155/2008/513701.
4. Guru SM, Fernando S, Halgamuge SK, Chan K: Intelligent fastening with A-BOLT Technology and Sensor Network. Assembly Automation 2004, 24(4):386-393.

BOOK CHAPER:

1. Tseng, C.-H., Chan, C.-K. K., Hsu, A. L., Halgamuge, S. K. and Tang, S.-L. (2011) Binning Metagenomic Sequences Using Seeded GSOM, in Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches (ed F. J. de Bruijn), John Wiley & Sons, Inc., Hoboken, NJ, USA. doi: 10.1002/9781118010518.ch42

CONFERENCE PAPERS:

1. Chan C.-KK, Halgamuge S.K.: Investigation of Average Mutual Information for Species Separation using GSOM. In: Future Generation Information Technology (FGIT 2009), pp. 42-49. Lecture Notes in Computer Science, Springer, Jeju Island, Korea (2009)
2. Chan C-KK, Hsu AL, Tang S-L, Halgamuge SK: A method for evaluating quality of clustering DNA fragments encoded in different nucleotide frequencies. In: 2007 Frontiers in the convergence of bioscience and information technologies (FBIT 2007): 11-13 Oct 2007; Jeju Island, Korea; 2007: 60-63.
3. Reinhard J, Chan C-KK, Halgamuge SK, Tang S-L, Kruse R: Region Identification on a Trained Growing Self-Organizing Map for Sequence Separation between Different Phylogenetic Genomes In: BIOINFO 2005: 22-24 Sep 2005; Busan, Korea: KAIST PRESS; 2005: 124-129.
4. Chan K, Kansara N, Mirbagheri M, Guru SM, Halgamuge SK, Fernando S: Development of hybrid interface for intelligent sensor management. In: HIS03: Dec 14-17 2003; Melbourne, Australia: IOS Press; 2003: 820-829.
5. Chan K, Lam G, Guru SM, Halgamuge MN, Fernando S: Development of a SMARTBOLT prototype with energy model for clustered sensor systems. In: FSKD'02: Nov 18-22 2002; Singapore; 2002: 280-284.
6. Guru SM, Chan C-KK, Halgamuge SK: Advanced Networked Sensor System. In: Knowledge Commercialisation Australasia Forum & Fair of Ideas: 26-28 Mar 2003; Sydney; 2003: Poster Communication.

MONSANTO INTERNAL CONFERENCE POSTERS:

1. Chan C.-KK, He K., Lv L., Wu X., Sun J., Zhang R., Cao Y.: In-house rice genome browser. In: TCM 2010, Jun 08-11, St. Louis, MO, USA (2010)
2. Sun J., Chan C-KK, Tao N., Blanchard M., Cao Y.: TE-Viewer: A visualization tool for examine molecular quality of transgenic events in our biotech plant testing pipeline. In: TCM 2010, Jun 08-11, St. Louis, MO, USA (2010)
3. He K., Chan C-KK, Lv L., Sun J., Wu X., Zhang R., Cao Y.: Visualizing Genomic Data: a survey of publicly available genome browsers and recommendations for Monsanto implementation. In: TCM 2010, Jun 08-11, St. Louis, MO, USA (2010)
4. Zhang R., Lv L., Sun J., He K., Chan C-KK, Wu X., Cao Y.: GE-Atlas: A graphical visualization tool for viewing and mining gene expression patterns. In: TCM 2010, Jun 08-11, St. Louis, MO, USA (2010)

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