Difference between revisions of "Seagrass Zmu Genome"

From Applied Bioinformatics Group
Jump to: navigation, search
Line 17: Line 17:
  
 
The gene models reported by MAKER in the format of gff can be downloaded from:
 
The gene models reported by MAKER in the format of gff can be downloaded from:
:[http://appliedbioinformatics.com.au/download/Zmu.gff3.tar.gz Gene_models]
+
:[http://appliedbioinformatics.com.au/download/Zmu_maker.gff3.tar.gz Gene_models]
 +
 
 +
 
 +
The domains annotation of predicted proteins in the format of gff can be downloaded from:
 +
:[http://appliedbioinformatics.com.au/download/Zmu_iprs.gff3.tar.gz Domains_annotation]
  
  
 
The tab-deliminated text file for orthologous groups between five species can be downloaded from  
 
The tab-deliminated text file for orthologous groups between five species can be downloaded from  
 
:[http://appliedbioinformatics.com.au/download/Zmu_orthogroups.txt.tar.gz Orthogroups]
 
:[http://appliedbioinformatics.com.au/download/Zmu_orthogroups.txt.tar.gz Orthogroups]

Revision as of 06:42, 18 April 2016

This page provides access to Zostera muelleri genome assembly and annotation data for the paper Lee et al. 2016.


The draft assembly can be downloaded from:

Scaffolds


The predicted genes in proteins, transcripts and CDS can be downloaded from:

Proteins
Transcripts
CDS


The gene models reported by MAKER in the format of gff can be downloaded from:

Gene_models


The domains annotation of predicted proteins in the format of gff can be downloaded from:

Domains_annotation


The tab-deliminated text file for orthologous groups between five species can be downloaded from

Orthogroups