Difference between revisions of "Soybean"

Revision as of 07:26, 8 October 2021

This is the supplementary data for Marsh et al.

[Gm20.INDELs.vcf.gz all indels on Gm20, Wm82 v4 assembly]

[Gm20.SNPs.vcf.gz all SNPs on Gm20, Wm82 v4 assembly]

[filtered_biallelic_Gm20.INs.vcf.gz filtered insertions on Gm20 - biallelic only]

[filtered_biallelic_Gm20.DELs.vcf.gz filtered deletions on Gm20 - biallelic only]

Supplementary Tables: Download here

The data can also be viewed on soybase and UWA Research Repository.

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-We have been working to develop and analyse a large collection of soybean germplasm. A manuscript has been submitted and supplementary information relating to this manuscript is available below.
+# Soybean genomics
+## Soybean cqProt003 supplementary data
+This is the supplementary data for Marsh et al.
+[Gm20.INDELs.vcf.gz all indels on Gm20, Wm82 v4 assembly]
+[Gm20.SNPs.vcf.gz all SNPs on Gm20, Wm82 v4 assembly]
+[filtered_biallelic_Gm20.INs.vcf.gz filtered insertions on Gm20 - biallelic only]
+[filtered_biallelic_Gm20.DELs.vcf.gz filtered deletions on Gm20 - biallelic only]
+## Soybean pangenome
+Supplementary information relating to Bayer et al. 2021, [https://acsess.onlinelibrary.wiley.com/doi/10.1002/tpg2.20109 Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding], is available below.
 [http://www.appliedbioinformatics.com.au/soybean JBrowse genome viewer]
@@ Line 5: / Line 22: @@
 Supplementary Tables: [http://www.appliedbioinformatics.com.au/download/Soybean_pangenome_Supp_Tables.xlsx Download here]
-The data can also be viewed on [https://soybase.org/projects/SoyBase.C2020.02.php soybase]
+The data can also be viewed on [https://soybase.org/projects/SoyBase.C2020.02.php soybase] and [https://research-repository.uwa.edu.au/en/datasets/soybean-pangenome-snps-assembly-annotation-pav UWA Research Repository].