Difference between revisions of "Soybean"
From Applied Bioinformatics Group
Philippbayer (talk | contribs) (→Soybean cqProt003 supplementary data) |
Philippbayer (talk | contribs) (→Soybean genomics) |
||
| Line 10: | Line 10: | ||
[https://appliedbioinformatics.com.au/download/cqProt-003_Supplementary_Tables.xlsx Supplementary Tables] | [https://appliedbioinformatics.com.au/download/cqProt-003_Supplementary_Tables.xlsx Supplementary Tables] | ||
| − | [ | + | [https://appliedbioinformatics.com.au/download/cqProt-003_Supplementary_Figures.docx Supplementary Figures] |
Files contain Gm20 with Wm82.a1.v4 reference | Files contain Gm20 with Wm82.a1.v4 reference | ||
| − | [ | + | [https://appliedbioinformatics.com.au/download/Gm20.INDELs.vcf.gz Raw Indels] |
| − | [ | + | [https://appliedbioinformatics.com.au/download/Gm20.SNPs.vcf.gz Raw SNPs] |
| − | [ | + | [https://appliedbioinformatics.com.au/download/filtered_biallelic_Gm20.INs.vcf.gz Filtered Insertions reformatted to biallelic] |
| − | [ | + | [https://appliedbioinformatics.com.au/download/filtered_biallelic_Gm20.DELs.vcf.gz Filtered Deletions reformatted to biallelic] |
| − | [ | + | [https://appliedbioinformatics.com.au/download/HM_input.tar.gz HaplotypeMiner input] |
| − | [ | + | [https://appliedbioinformatics.com.au/download/protein_Gm20.SNPs.id.biallic_maf_0.01_geno_0.1.vcf.gz Filtered SNPs] |
=== Soybean pangenome === | === Soybean pangenome === | ||
| Line 30: | Line 30: | ||
Supplementary information relating to Bayer et al. 2021, [https://acsess.onlinelibrary.wiley.com/doi/10.1002/tpg2.20109 Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding], is available below. | Supplementary information relating to Bayer et al. 2021, [https://acsess.onlinelibrary.wiley.com/doi/10.1002/tpg2.20109 Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding], is available below. | ||
| − | [ | + | [https://www.appliedbioinformatics.com.au/soybean JBrowse genome viewer] |
| − | Supplementary Tables: [ | + | Supplementary Tables: [https://www.appliedbioinformatics.com.au/download/Soybean_pangenome_Supp_Tables.xlsx Download here] |
The data can also be viewed on [https://soybase.org/projects/SoyBase.C2020.02.php soybase] and [https://research-repository.uwa.edu.au/en/datasets/soybean-pangenome-snps-assembly-annotation-pav UWA Research Repository]. | The data can also be viewed on [https://soybase.org/projects/SoyBase.C2020.02.php soybase] and [https://research-repository.uwa.edu.au/en/datasets/soybean-pangenome-snps-assembly-annotation-pav UWA Research Repository]. | ||
Latest revision as of 07:10, 13 October 2021
Soybean genomics
Soybean cqProt003 supplementary data
This is the supplementary data for Marsh et al.
Files contain Gm20 with Wm82.a1.v4 reference
Filtered Insertions reformatted to biallelic
Filtered Deletions reformatted to biallelic
Soybean pangenome
Supplementary information relating to Bayer et al. 2021, Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding, is available below.
Supplementary Tables: Download here
The data can also be viewed on soybase and UWA Research Repository.
